MolNFT v1 · #139952 · protein
[nife]-hydrogenase (hyb-type) from citrobacter sp. S-77 in a ferricyanide-oxidized condition
5XVC: “[nife]-hydrogenase (hyb-type) from citrobacter sp. S-77 in a ferricyanide-oxidized condition”. X-ray diffraction, 5 ligands (NFV, SF4, F3S). MolNFT v1 #139952 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XVC
- Type
- protein
- Length
- 1,638 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NFV, SF4, F3S, 8JU, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L, M | — | protein | 551 | — | — |
| S, T | — | protein | 268 | — | — |
Ligands and binding sites
- NFV · Ni-Fe oxidized active center · ligand · 2 copies · chains L, M
- SF4 · Iron/sulfur cluster · ligand · 2 copies · chains S, T
- F3S · FE3-S4 cluster · ligand · 2 copies · chains L, S, M, T
- 8JU · FE4-S4-O cluster · ligand · 2 copies · chains L, S, M, T
- MG · Magnesium ion · metal · 2 copies · chains L, M
- PEG · Di(hydroxyethyl)ether · additive · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XVC · [NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5XVC · PDBe 5XVC
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