MolNFT v1 · #139938 · protein
Crystal structure of ATG101-ATG13HORMA
5XUY · Autophagy-related protein 13: “Crystal structure of ATG101-ATG13HORMA”. X-ray diffraction, 4 pockets (best druggability 0.74). MolNFT v1 #139938 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XUY
- Type
- protein
- Length
- 784 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autophagy-related protein 13; Autophagy-related protein 101
- UniProt
- O75143, Q9BSB4
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 4 distinct chains · 34% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autophagy-related protein 13 | protein | 180 | 33% helix, 28% strand | O75143 |
| B | Autophagy-related protein 101 | protein | 205 | 33% helix, 33% strand | Q9BSB4 |
| C | Autophagy-related protein 13 | protein | 184 | 35% helix, 30% strand | O75143 |
| D | Autophagy-related protein 101 | protein | 215 | 34% helix, 32% strand | Q9BSB4 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 587 | 0.74 | 0.81 | 74 | empty |
| 2 | 258 | 0.66 | 0.83 | 35 | empty |
| 3 | 101 | 0.36 | 0.74 | 18 | empty |
| 4 | 75 | 0.34 | 0.75 | 17 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1406 Ų buried · 24 hydrogen bonds · protein-protein
- C–D · 1371 Ų buried · 25 hydrogen bonds · protein-protein
- B–C · 318 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 278 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 42 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5XUY · Crystal structure of ATG101-ATG13HORMA · the same entry in another collection · chain D against D, TM-score 1.00
- O75143 · AlphaFold monomer V2.0 prediction for autophagy-related protein 13 (O75143) · a predicted model of the same protein · chain C against A, TM-score 0.99
- Q9BSB4 · AlphaFold monomer V2.0 prediction for autophagy-related protein 101 (Q9BSB4) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75143
- Every structure of UniProt Q9BSB4
- Elsewhere: RCSB PDB 5XUY · PDBe 5XUY · UniProt O75143 · UniProt Q9BSB4
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