MolNFT v1 · #139933 · protein + DNA + RNA
Crystal structure of lachnospiraceae bacterium ND2006 CPF1 in complex with crrna and target DNA (tcta pam)
5XUT: “Crystal structure of lachnospiraceae bacterium ND2006 CPF1 in complex with crrna and target DNA (tcta pam)”. X-ray diffraction, 2 ligands (MG, NA). MolNFT v1 #139933 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XUT
- Type
- protein + DNA + RNA
- Length
- 1,295 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- MG, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1217 | — | — |
| B | — | rna | 40 | — | — |
| C | — | dna | 29 | — | — |
| D | — | dna | 9 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A, B
- NA · Sodium ion · metal · chains B, C
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XUT · Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5XUT · PDBe 5XUT
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.