Research workbench
Crystal structure of lachnospiraceae bacterium ND2006 CPF1 in complex with crrna and target DNA (tcta pam)
Analyse Crystal structure of lachnospiraceae bacterium ND2006 CPF1 in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XUT
- Type
- protein + DNA + RNA
- Length
- 1,295 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- MG, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1217 | — | — |
| B | — | rna | 40 | — | — |
| C | — | dna | 29 | — | — |
| D | — | dna | 9 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A, B
- NA · Sodium ion · metal · chains B, C
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XUT · Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5XUT · PDBe 5XUT
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.