MolNFT v1 · #139762 · protein

Sugar transporter of ATSWEET13 in inward-facing state with a substrate analog

5XPD: “Sugar transporter of ATSWEET13 in inward-facing state with a substrate analog”. X-ray diffraction, 1 ligand (DCM), 1 pocket (best druggability 0.82). MolNFT v1 #139762 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XPD
Type: protein
Length: 269 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sugar transporter
Ligands: DCM
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 70% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sugar transporter	protein	269	70% helix, 4% strand	—

Ligands and binding sites

DCM · 2'-deoxycytidine-5'-monophosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	784	0.82	0.84	49	DCM

Compared structures

5XPD · Sugar transporter of AtSWEET13 in inward-facing state with a substrate analog · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5XPD · PDBe 5XPD

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