MolNFT v1 · #139748 · protein
Crystal structure of TRNA(HIS) guanylyltranserase from saccharomyces cerevisiae
5XOX: “Crystal structure of TRNA(HIS) guanylyltranserase from saccharomyces cerevisiae”. X-ray diffraction, 3 ligands (GTP, MG, PO4). MolNFT v1 #139748 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XOX
- Type
- protein
- Length
- 1,225 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P53215
- Ligands
- GTP, MG, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | — | protein | 229 | — | P53215 |
| F | — | protein | 80 | — | P53215 |
Ligands and binding sites
- GTP · Guanosine-5'-triphosphate · ligand · 5 copies · chains A, B, C, D, E
- MG · Magnesium ion · metal · 10 copies · chains A, B, C, D, E
- PO4 · Phosphate ion · ion · 5 copies · chains A, B, E, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XOX · Crystal structure of tRNA(His) guanylyltranserase from Saccharomyces cerevisiae · the same entry in another collection · chain F against F, TM-score 1.00
- P53215 · AlphaFold monomer V2.0 prediction for TRNA(HIS) guanylyltransferase (P53215) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53215
- Elsewhere: RCSB PDB 5XOX · PDBe 5XOX · UniProt P53215
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