MolNFT v1 · #139730 · protein
Crystal structure of human paired immunoglobulin-like type 2 receptor alpha with synthesized glycopeptide I
5XOF: “Crystal structure of human paired immunoglobulin-like type 2 receptor alpha with synthesized glycopeptide I”. X-ray diffraction, 2 ligands (NDG, SIA). MolNFT v1 #139730 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XOF
- Type
- protein
- Length
- 507 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UKJ1, P29474
- Ligands
- NDG, SIA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 119 | — | Q9UKJ1 |
| B, C, D | — | protein | 120 | — | Q9UKJ1 |
| O, P, Q, R | — | protein | 7 | — | P29474 |
Ligands and binding sites
- NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · 4 copies · chains A, C, O, B, D, P, Q, R
- SIA · N-acetyl-alpha-neuraminic acid · sugar · 4 copies · chains A, B, C, D, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XOF · Crystal structure of human paired immunoglobulin-like type 2 receptor alpha with… · the same entry in another collection · chain R against R, TM-score 1.00
- Q9UKJ1 · AlphaFold monomer V2.0 prediction for paired immunoglobulin-like type 2 receptor alpha… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UKJ1
- Every structure of UniProt P29474
- Elsewhere: RCSB PDB 5XOF · PDBe 5XOF · UniProt Q9UKJ1 · UniProt P29474
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