MolNFT v1 · #139706 · protein

Crystal structures of human SALM5

5XNQ · Leucine-rich repeat and fibronectin type-III domain…: “Crystal structures of human SALM5”. X-ray diffraction, 5 ligands (NAG, CA, NA). MolNFT v1 #139706 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XNQ
Type: protein
Length: 284 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Leucine-rich repeat and fibronectin type-III domain- containing protein 5
UniProt: Q96NI6
Ligands: NAG, CA, NA, CL, SO4

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Leucine-rich repeat and fibronectin type-III domain- containing protein 5	protein	284	9% helix, 18% strand	Q96NI6

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
CA · Calcium ion · metal · 4 copies · chains A
NA · Sodium ion · metal · 3 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).

Compared structures

5XNQ · Crystal structures of human SALM5 · the same entry in another collection · chain A against A, TM-score 1.00
Q96NI6 · AlphaFold monomer V2.0 prediction for leucine-rich repeat and fibronectin type-III… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96NI6
Elsewhere: RCSB PDB 5XNQ · PDBe 5XNQ · UniProt Q96NI6

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