MolNFT v1 · #139698 · protein
Crystal structure of microcystis aeruginosa pcc 7806 ASPARTATE/GLUTAMATE racemase in complex with D-glutamate
5XNI · Mcyf: “Crystal structure of microcystis aeruginosa pcc 7806 ASPARTATE/GLUTAMATE racemase in complex with D-glutamate”. X-ray diffraction, 1 ligand (DGL), 2 pockets (best druggability 0.35). MolNFT v1 #139698 on GenesisL1: 3D…
- PDB
- 5XNI
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mcyf
- UniProt
- Q9RNB4
- Ligands
- DGL
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mcyf | protein | 227 | 56% helix, 13% strand | Q9RNB4 |
Ligands and binding sites
- DGL · D-glutamic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.35 | 0.75 | 19 | empty |
| 2 | 77 | 0.30 | 0.72 | 13 | empty |
Compared structures
- 5XNI · Crystal structure of Microcystis aeruginosa PCC 7806 aspartate/glutamate racemase in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RNB4
- Elsewhere: RCSB PDB 5XNI · PDBe 5XNI · UniProt Q9RNB4
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