MolNFT v1 · #139679 · protein

Verticillium effector PEVD1

5XMZ · Effector protein PEVD1: “Verticillium effector PEVD1”. X-ray diffraction, 2 ligands (CA, CL). MolNFT v1 #139679 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5XMZ
Type: protein
Length: 122 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Effector protein PEVD1
UniProt: G0Y276
Ligands: CA, CL

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 62% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Effector protein PEVD1	protein	122	0% helix, 62% strand	G0Y276

Ligands and binding sites

CA · Calcium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5XMZ · Verticillium effector PevD1 · the same entry in another collection · chain A against A, TM-score 1.00
G0Y276 · AlphaFold monomer V2.0 prediction for effector protein PEVD1 (G0Y276) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0Y276
Elsewhere: RCSB PDB 5XMZ · PDBe 5XMZ · UniProt G0Y276

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