MolNFT v1 · #139632 · protein
Dimer form of M. tuberculosis pkni sensor domain
5XLL · SERINE/THREONINE-protein kinase pkni: “Dimer form of M. tuberculosis pkni sensor domain”. X-ray diffraction, 3 pockets (best druggability 0.66). MolNFT v1 #139632 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XLL
- Type
- protein
- Length
- 317 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase pkni
- EC
- 2.7.11.1
- UniProt
- P9WI69
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase pkni (EC 2.7.11.1) | protein | 158 | 2% helix, 42% strand | P9WI69 |
| B | SERINE/THREONINE-protein kinase pkni (EC 2.7.11.1) | protein | 159 | 2% helix, 41% strand | P9WI69 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.66 | 0.82 | 33 | empty |
| 2 | 509 | 0.64 | 0.76 | 41 | empty |
| 3 | 491 | 0.64 | 0.76 | 42 | empty |
Interfaces
1 interface between chains.
- A–B · 537 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 4 disulfide (engineered, disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WI69
- Elsewhere: RCSB PDB 5XLL · PDBe 5XLL · UniProt P9WI69
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