MolNFT v1 · #139505 · protein
Crystal structure of ycgt from bacillus subtilis
5XHU · Ferredoxin--NADP reductase: “Crystal structure of ycgt from bacillus subtilis”. X-ray diffraction, 1 ligand (FAD), 2 pockets (best druggability 0.73). MolNFT v1 #139505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XHU
- Type
- protein
- Length
- 329 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin--NADP reductase
- EC
- 1.18.1.2
- UniProt
- A0A164V7W7
- Ligands
- FAD
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferredoxin--NADP reductase (EC 1.18.1.2) | protein | 329 | 28% helix, 28% strand | A0A164V7W7 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 199 | 0.73 | 0.89 | 39 | FAD |
| 2 | 75 | 0.36 | 0.77 | 20 | empty |
Compared structures
- 5XHU · Crystal structure of ycgT from bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A164V7W7
- Elsewhere: RCSB PDB 5XHU · PDBe 5XHU · UniProt A0A164V7W7
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