MolNFT v1 · #139401 · protein
Crystal structure of a hydrogen sulfide-producing enzyme (FN1220) from fusobacterium nucleatum in complex with L-serine-plp schiff base
5XEN: “Crystal structure of a hydrogen sulfide-producing enzyme (FN1220) from fusobacterium nucleatum in complex…”. X-ray diffraction, 2 ligands (PLP, CA). MolNFT v1 #139401 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5XEN
- Type
- protein
- Length
- 603 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8RE94
- Ligands
- PLP, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 301 | — | Q8RE94 |
| B | — | protein | 302 | — | Q8RE94 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · 4 copies · chains A, B
- CA · Calcium ion · metal · 8 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5XEN · Crystal structure of a hydrogen sulfide-producing enzyme (Fn1220) from Fusobacterium… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8RE94
- Elsewhere: RCSB PDB 5XEN · PDBe 5XEN · UniProt Q8RE94
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