MolNFT v1 · #139327 · protein
X-ray structure of domains D1 and D2 of clostridium perfringens pili protein cppa
5XCB · Probable surface protein: “X-ray structure of domains D1 and D2 of clostridium perfringens pili protein cppa”. X-ray diffraction, 1 pocket (best druggability 0.27). MolNFT v1 #139327 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5XCB
- Type
- protein
- Length
- 303 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable surface protein
- UniProt
- Q8XP10
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable surface protein | protein | 303 | 12% helix, 45% strand | Q8XP10 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.27 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 1 isopeptide (isopeptide).
Compared structures
- 5XCB · X-ray structure of domains D1 and D2 of Clostridium perfringens pili protein CppA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8XP10
- Elsewhere: RCSB PDB 5XCB · PDBe 5XCB · UniProt Q8XP10
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