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X-ray structure of domains D1 and D2 of clostridium perfringens pili protein cppa

Analyse X-ray structure of domains D1 and D2 of clostridium perfringens pili protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5XCB
Type: protein
Length: 303 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable surface protein
UniProt: Q8XP10
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable surface protein	protein	303	12% helix, 45% strand	Q8XP10

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.27	0.74	14	empty

Modifications

Observed in the structure: 1 isopeptide (isopeptide).

Compared structures

5XCB · X-ray structure of domains D1 and D2 of Clostridium perfringens pili protein CppA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8XP10
Elsewhere: RCSB PDB 5XCB · PDBe 5XCB · UniProt Q8XP10

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