MolNFT v1 · #139321 · protein

Crystal structure of acanthamoeba polyphaga mimivirus rab GTPase in complex with GTP

5XC5 · Probable rab-related GTPase: “Crystal structure of acanthamoeba polyphaga mimivirus rab GTPase in complex with GTP”. X-ray diffraction, 2 ligands (GTP, MG), 1 pocket (best druggability 0.35). MolNFT v1 #139321 on GenesisL1: 3D…

PDB: 5XC5
Type: protein
Length: 167 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable rab-related GTPase
UniProt: Q5UQ27
Ligands: GTP, MG
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable rab-related GTPase	protein	167	39% helix, 25% strand	Q5UQ27

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
ACT · Acetate ion · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.35	0.78	17	GTP, MG

Compared structures

5XC5 · Crystal structure of Acanthamoeba polyphaga mimivirus Rab GTPase in complex with GTP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5UQ27
Elsewhere: RCSB PDB 5XC5 · PDBe 5XC5 · UniProt Q5UQ27

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