MolNFT v1 · #139228 · protein
Crystal structure of calaxin with calcium
5X9A: “Crystal structure of calaxin with calcium”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.68). MolNFT v1 #139228 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X9A
- Type
- protein
- Length
- 386 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calaxin
- UniProt
- Q8T893
- Ligands
- CA
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calaxin | protein | 188 | 67% helix, 5% strand | Q8T893 |
| B | Calaxin | protein | 198 | 66% helix, 5% strand | Q8T893 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 463 | 0.68 | 0.79 | 50 | empty |
| 2 | 366 | 0.68 | 0.81 | 44 | empty |
| 3 | 109 | 0.46 | 0.79 | 18 | empty |
| 4 | 79 | 0.39 | 0.78 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 955 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5X9A · Crystal structure of calaxin with calcium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8T893
- Elsewhere: RCSB PDB 5X9A · PDBe 5X9A · UniProt Q8T893
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