MolNFT v1 · #13915 · protein

T. aquaticus ffh ng domain at 1.1A resolution

1LS1 · Signal recognition particle protein: “T. aquaticus ffh ng domain at 1.1A resolution”. X-ray diffraction, 2 ligands (MG, OXY), 2 pockets (best druggability 0.36). MolNFT v1 #13915 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1LS1
Type: protein
Length: 289 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Signal recognition particle protein
UniProt: O07347
Ligands: MG, OXY
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Signal recognition particle protein	protein	289	54% helix, 13% strand	O07347

Ligands and binding sites

MG · Magnesium ion · metal · chains A
OXY · Oxygen molecule · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.36	0.76	14	empty
2	51	0.33	0.79	20	empty

Compared structures

1LS1 · T. aquaticus Ffh NG Domain at 1.1A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
O07347 · AlphaFold monomer V2.0 prediction for signal recognition particle protein (O07347) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O07347
Elsewhere: RCSB PDB 1LS1 · PDBe 1LS1 · UniProt O07347

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