MolNFT v1 · #139064 · protein
Crystal structure of P-ub-S65-NH2
5X3M · Polyubiquitin-B: “Crystal structure of P-ub-S65-NH2”. X-ray diffraction. MolNFT v1 #139064 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5X3M
- Type
- protein
- Length
- 149 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyubiquitin-B; D-ubiquitin
- UniProt
- P0CG47
Structure
x-ray diffraction · 2 distinct chains · 24% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyubiquitin-B | protein | 76 | 24% helix, 34% strand | P0CG47 |
| D | D-ubiquitin | protein | 73 | 25% helix, 34% strand | — |
Interfaces
1 interface between chains.
- A–D · 391 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 68 d-amino, 2 modified (D-amino acid, nonstandard, phosphorylation).
Compared structures
- 5X3M · crystal structure of p-Ub-S65-NH2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG47
- Elsewhere: RCSB PDB 5X3M · PDBe 5X3M · UniProt P0CG47
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