MolNFT v1 · #138980 · protein
Crystal structure of streptomyces coelicolor RRAAS2, an unusual member of the RNase es inhibitor rraa protein family
5X15 · Putative transferase: “Crystal structure of streptomyces coelicolor RRAAS2, an unusual member of the RNase es inhibitor rraa protein…”. X-ray diffraction, 5 pockets (best druggability 0.66). MolNFT v1 #138980 on GenesisL1: 3D…
- PDB
- 5X15
- Type
- protein
- Length
- 595 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative transferase
- UniProt
- Q9FBS9
- Pockets
- 5 · best druggability 0.66
Structure
x-ray diffraction · 3 distinct chains · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative transferase | protein | 198 | 31% helix, 25% strand | Q9FBS9 |
| B | Putative transferase | protein | 199 | 29% helix, 22% strand | Q9FBS9 |
| C | Putative transferase | protein | 198 | 28% helix, 22% strand | Q9FBS9 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 702 | 0.66 | 0.76 | 53 | empty |
| 2 | 383 | 0.60 | 0.77 | 44 | empty |
| 3 | 203 | 0.51 | 0.76 | 29 | empty |
| 4 | 153 | 0.45 | 0.76 | 19 | empty |
| 5 | 142 | 0.44 | 0.75 | 21 | empty |
Interfaces
3 interfaces between chains.
- A–C · 948 Ų buried · 14 hydrogen bonds · protein-protein
- A–B · 934 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 912 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5X15 · Crystal structure of Streptomyces coelicolor RraAS2, an unusual member of the RNase ES… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FBS9
- Elsewhere: RCSB PDB 5X15 · PDBe 5X15 · UniProt Q9FBS9
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