Research workbench
Crystal structure of streptomyces coelicolor RRAAS2, an unusual member of the RNase es inhibitor rraa protein family
Analyse Crystal structure of streptomyces coelicolor RRAAS2, an unusual member of the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5X15
- Type
- protein
- Length
- 595 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative transferase
- UniProt
- Q9FBS9
- Pockets
- 5 · best druggability 0.66
Structure
x-ray diffraction · 3 distinct chains · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative transferase | protein | 198 | 31% helix, 25% strand | Q9FBS9 |
| B | Putative transferase | protein | 199 | 29% helix, 22% strand | Q9FBS9 |
| C | Putative transferase | protein | 198 | 28% helix, 22% strand | Q9FBS9 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 702 | 0.66 | 0.76 | 53 | empty |
| 2 | 383 | 0.60 | 0.77 | 44 | empty |
| 3 | 203 | 0.51 | 0.76 | 29 | empty |
| 4 | 153 | 0.45 | 0.76 | 19 | empty |
| 5 | 142 | 0.44 | 0.75 | 21 | empty |
Interfaces
3 interfaces between chains.
- A–C · 948 Ų buried · 14 hydrogen bonds · protein-protein
- A–B · 934 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 912 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5X15 · Crystal structure of Streptomyces coelicolor RraAS2, an unusual member of the RNase ES… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FBS9
- Elsewhere: RCSB PDB 5X15 · PDBe 5X15 · UniProt Q9FBS9
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