MolNFT v1 · #138940 · protein
Alpha-N-acetylgalactosaminidase nagbb from bifidobacterium bifidum - gal-nhac-dnj complex
5WZR: “Alpha-N-acetylgalactosaminidase nagbb from bifidobacterium bifidum - gal-nhac-dnj complex”. X-ray diffraction, 3 ligands (DJN, ZN, CA). MolNFT v1 #138940 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WZR
- Type
- protein
- Length
- 1,260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- G5ELM1
- Ligands
- DJN, ZN, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 630 | — | G5ELM1 |
| B | — | protein | 630 | — | G5ELM1 |
Ligands and binding sites
- DJN · N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl) piperidin-3-yl]acetamide · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WZR · Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - Gal-NHAc-DNJ complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G5ELM1
- Elsewhere: RCSB PDB 5WZR · PDBe 5WZR · UniProt G5ELM1
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