MolNFT v1 · #138909 · protein
Structural of pseudomonas aeruginosa dspi
5WYD: “Structural of pseudomonas aeruginosa dspi”. X-ray diffraction, 1 ligand (PTD). MolNFT v1 #138909 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WYD
- Type
- protein
- Length
- 1,572 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9I5I4
- Ligands
- PTD
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 262 | — | Q9I5I4 |
Ligands and binding sites
- PTD · Pentanedial · ligand · 3 copies · chains A, D, E
- IPA · Isopropyl alcohol · additive · 7 copies · chains B, C, F
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains B, C
- MRD · (4R)-2-methylpentane-2,4-diol · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WYD · Structural of Pseudomonas aeruginosa DspI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I5I4
- Elsewhere: RCSB PDB 5WYD · PDBe 5WYD · UniProt Q9I5I4
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