MolNFT v1 · #138897 · protein

Crystal structure of microcystis aeruginosa pcc 7806 aspartate racemase in complex with D-aspartate

5WXZ · Mcyf: “Crystal structure of microcystis aeruginosa pcc 7806 aspartate racemase in complex with D-aspartate”. X-ray diffraction, 1 ligand (DAS), 2 pockets (best druggability 0.33). MolNFT v1 #138897 on GenesisL1: 3D structure…

PDB: 5WXZ
Type: protein
Length: 227 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mcyf
UniProt: Q9RNB4
Ligands: DAS
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mcyf	protein	227	53% helix, 14% strand	Q9RNB4

Ligands and binding sites

DAS · D-aspartic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.33	0.74	17	empty
2	61	0.28	0.73	15	empty

Compared structures

5WXZ · Crystal structure of Microcystis aeruginosa PCC 7806 aspartate racemase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RNB4
Elsewhere: RCSB PDB 5WXZ · PDBe 5WXZ · UniProt Q9RNB4

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