MolNFT v1 · #138890 · protein
Crystal structure of upa in complex with upain-2-4-W3A
5WXR · Urokinase-type plasminogen activator chain B: “Crystal structure of upa in complex with upain-2-4-W3A”. X-ray diffraction, 1 pocket (best druggability 0.38). MolNFT v1 #138890 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5WXR
- Type
- protein
- Length
- 259 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Urokinase-type plasminogen activator chain B; Upain-2-4-W3A peptide
- EC
- 3.4.21.73
- UniProt
- P00749
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| U | Urokinase-type plasminogen activator chain B (EC 3.4.21.73) | protein | 245 | 11% helix, 38% strand | P00749 |
| P | Upain-2-4-W3A peptide | protein | 14 | 21% helix, 0% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.38 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- U–P · 673 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 5WXR · Crystal structure of uPA in complex with upain-2-4-W3A · the same entry in another collection · chain U against U, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00749
- Elsewhere: RCSB PDB 5WXR · PDBe 5WXR · UniProt P00749
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