MolNFT v1 · #138879 · protein
Structure of taf phd finger domain binds to H3(1-15)K4AC
5WXG · Transcription initiation factor tfiid subunit 3: “Structure of taf phd finger domain binds to H3(1-15)K4AC”. X-ray diffraction, 2 ligands (ZN, MG). MolNFT v1 #138879 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WXG
- Type
- protein
- Length
- 70 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription initiation factor tfiid subunit 3; Histone H3K4AC
- UniProt
- Q5VWG9
- Ligands
- ZN, MG
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription initiation factor tfiid subunit 3 | protein | 63 | 6% helix, 22% strand | Q5VWG9 |
| P | Histone H3K4AC | protein | 7 | 0% helix, 43% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–P · 500 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (acetylation).
Compared structures
- 5WXG · Structure of TAF PHD finger domain binds to H3(1-15)K4ac · the same entry in another collection · chain A against A, TM-score 1.00
- Q5VWG9 · AlphaFold monomer V2.0 prediction for transcription initiation factor tfiid subunit 3… · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5VWG9
- Elsewhere: RCSB PDB 5WXG · PDBe 5WXG · UniProt Q5VWG9
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