MolNFT v1 · #13885 · protein
Crystal structure of bacillus stearothermophilus peptide deformylase complexed with antibiotic actinonin
1LQY · Peptide deformylase 2: “Crystal structure of bacillus stearothermophilus peptide deformylase complexed with antibiotic actinonin”. X-ray diffraction, 2 ligands (BB2, NI), 1 pocket (best druggability 0.47). MolNFT v1 #13885 on…
- PDB
- 1LQY
- Type
- protein
- Length
- 184 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide deformylase 2
- EC
- 3.5.1.88
- UniProt
- O31410
- Ligands
- BB2, NI
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide deformylase 2 (EC 3.5.1.88) | protein | 184 | 29% helix, 28% strand | O31410 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.47 | 0.79 | 22 | BB2 |
Compared structures
- 1LQY · Crystal Structure of Bacillus stearothermophilus Peptide Deformylase Complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
- O31410 · AlphaFold monomer V2.0 prediction for peptide deformylase 2 (O31410) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31410
- Elsewhere: RCSB PDB 1LQY · PDBe 1LQY · UniProt O31410
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