MolNFT v1 · #138752 · protein + RNA
Pyrococcus abyssi methyltransferase PATRM5A bound by mta and cognate tRNA
5WT3: “Pyrococcus abyssi methyltransferase PATRM5A bound by mta and cognate tRNA”. X-ray diffraction, 1 ligand (MTA). MolNFT v1 #138752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WT3
- Type
- protein + RNA
- Length
- 405 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9V2G1
- Ligands
- MTA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 332 | — | Q9V2G1 |
| C | — | rna | 73 | — | — |
Ligands and binding sites
- MTA · 5'-deoxy-5'-methylthioadenosine · ligand · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WT3 · Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA · the same entry in another collection · chain A against A, TM-score 1.00
- Q9V2G1 · AlphaFold monomer V2.0 prediction for tRNA (GUANINE(37)-N1)/4-DEMETHYLWYOSINE(37)-methyltr… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9V2G1
- Elsewhere: RCSB PDB 5WT3 · PDBe 5WT3 · UniProt Q9V2G1
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