MolNFT v1 · #13851 · protein
A structural basis for the chiral preferences of lipases
1LPS: “A structural basis for the chiral preferences of lipases”. X-ray diffraction, 3 ligands (MPC, NAG, CA), 3 pockets (best druggability 0.64). MolNFT v1 #13851 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1LPS
- Type
- protein
- Length
- 534 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipase
- EC
- 3.1.1.3
- UniProt
- P20261
- Ligands
- MPC, NAG, CA
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipase (EC 3.1.1.3) | protein | 534 | 37% helix, 15% strand | P20261 |
Ligands and binding sites
- MPC · (1S)-menthyl hexyl phosphonate group · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 343 | 0.64 | 0.79 | 45 | MPC |
| 2 | 94 | 0.42 | 0.78 | 17 | empty |
| 3 | 74 | 0.35 | 0.76 | 24 | empty |
Modifications
Observed in the structure: 2 disulfide, 2 glycan, 1 covalent (disulfide, N-glycosylation, covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20261
- Elsewhere: RCSB PDB 1LPS · PDBe 1LPS · UniProt P20261
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