MolNFT v1 · #138504 · protein
KRAS G12V, bound to gppnhp and miniprotein 225-15A/B
5WLB: “KRAS G12V, bound to gppnhp and miniprotein 225-15A/B”. X-ray diffraction, 3 ligands (GNP, MG, SO4). MolNFT v1 #138504 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WLB
- Type
- protein
- Length
- 452 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01116
- Ligands
- GNP, MG, SO4
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 159 | — | P01116 |
| B | — | protein | 34 | — | — |
| C | — | protein | 34 | — | — |
| D | — | protein | 163 | — | P01116 |
| E | — | protein | 32 | — | — |
| F | — | protein | 30 | — | — |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · 2 copies · chains A, D
- MG · Magnesium ion · metal · 2 copies · chains A, D
- SO4 · Sulfate ion · ion · 2 copies · chains C
- PG4 · Tetraethylene glycol · additive · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WLB · KRas G12V, bound to GppNHp and miniprotein 225-15a/b · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01116
- Elsewhere: RCSB PDB 5WLB · PDBe 5WLB · UniProt P01116
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