MolNFT v1 · #138478 · protein
2.05 a resolution structure of MERS 3CL protease in complex with inhibitor GC376
5WKJ · ORF1A protein: “2.05 a resolution structure of MERS 3CL protease in complex with inhibitor GC376”. X-ray diffraction, 3 ligands (B1S, K36, CA), 2 pockets (best druggability 0.55). MolNFT v1 #138478 on GenesisL1: 3D structure…
- PDB
- 5WKJ
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF1A protein
- UniProt
- A0A1L2E0X0
- Ligands
- B1S, K36, CA
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ORF1A protein | protein | 302 | 24% helix, 28% strand | A0A1L2E0X0 |
Ligands and binding sites
- B1S · (1R,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid · ligand · chains A
- K36 · (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 255 | 0.55 | 0.77 | 37 | B1S, K36 |
| 2 | 166 | 0.44 | 0.74 | 29 | empty |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 5WKJ · 2.05 A resolution structure of MERS 3CL protease in complex with inhibitor GC376 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1L2E0X0
- Elsewhere: RCSB PDB 5WKJ · PDBe 5WKJ · UniProt A0A1L2E0X0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.