MolNFT v1 · #138403 · protein

2.0 ångström resolution crystal structure of udp-N-acetylglucosamine 1-carboxyvinyltransferase from streptococcus pneumoniae in complex with uridine-diphosphate-2(N-acetylglucosaminyl) butyric acid, (2R)- 2-(PHOSPHONOOXY)PROPANOIC acid and magnesium.

5WI5: “2.0 ångström resolution crystal structure of udp-N-acetylglucosamine 1-carboxyvinyltransferase from…”. X-ray diffraction, 3 ligands (0V5, EPU, MG). MolNFT v1 #138403 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5WI5
Type: protein
Length: 1,687 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q97NQ4
Ligands: 0V5, EPU, MG

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, D	—	protein	422	—	Q97NQ4
C	—	protein	421	—	Q97NQ4

Ligands and binding sites

0V5 · (2R)-2-(phosphonooxy)propanoic acid · ligand · 4 copies · chains A, B, C, D
EPU · Uridine-diphosphate-2(N-acetylglucosaminyl) butyric acid · ligand · 4 copies · chains A, B, C, D
MG · Magnesium ion · metal · 4 copies · chains B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5WI5 · 2.0 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine… · the same entry in another collection · chain A against A, TM-score 1.00
Q97NQ4 · AlphaFold monomer V2.0 prediction for udp-N-acetylglucosamine 1-carboxyvinyltransferase 1… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q97NQ4
Elsewhere: RCSB PDB 5WI5 · PDBe 5WI5 · UniProt Q97NQ4

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