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Ligand · EPU

EPU · Uridine-diphosphate-2(N-acetylglucosaminyl) butyric acid

EPU, Uridine-diphosphate-2(N-acetylglucosaminyl) butyric acid (C20 H29 N3 O19 P2, 677.4 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
EPU
Formula
C20 H29 N3 O19 P2
Class
ligand
Structures
5
PDB entries
3

Binding sites

EPU in 5 structures; the first of them:

  • 5WI5 · 2.0 Angstrom Resolution Crystal Structure of UDP-N-acetylglucosamine… · EPU A503 · binds LYS23, ASN24, LEU27, ASP51, ALA97, ILE122, ARG125, PRO126 and 18 more
  • 6Q11 · Crystal structure of MurA from Clostridium difficile, mutation C116S, in the presence of… · EPU A501 · binds LYS22, ASN23, ALA93, ILE118, THR120, ARG121, PRO122, ILE123 and 13 more
  • 5WI5 · 2.0 ångström resolution crystal structure of udp-N-acetylglucosamine… · EPU A503 · binds LYS23, ASN24, LEU27, ALA97, ARG125, PRO126, ILE127, ASP128 and 12 more
  • 6CN1 · 2.75 ångström resolution crystal structure of udp-N-acetylglucosamine… · EPU A501 · binds LYS22, ASN23, ALA94, ILE119, SER121, ARG122, PRO123, VAL124 and 13 more
  • 6Q11 · Crystal structure of mura from clostridium difficile, mutation C116S, in the presence of… · EPU A501 · binds LYS22, ASN23, ALA93, ILE118, THR120, ARG121, PRO122, ILE123 and 13 more

Residues it binds most

ARG 18, VAL 18, LEU 18, ASP 18, THR 18, SER 18, ILE 18, PHE 18, PRO 18, ALA 18 (residue and the binding sites it lines).

Found with

  • 0V5 · (2R)-2-(phosphonooxy)propanoic acid
  • MG · Magnesium ion
  • NA · Sodium ion
  • EDO · 1,2-ethanediol
  • CL · Chloride ion

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