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Ligand · EPU

EPU · Uridine-diphosphate-2(N-acetylglucosaminyl) butyric acid

EPU, Uridine-diphosphate-2(N-acetylglucosaminyl) butyric acid (C20 H29 N3 O19 P2, 677.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
EPU
Formula
C20 H29 N3 O19 P2
Class
ligand
Structures
4
PDB entries
3

Binding sites

EPU in 4 structures; the first of them:

  • 6Q11 · Crystal structure of MurA from Clostridium difficile, mutation C116S, in the presence of… · EPU A501 · binds LYS22, ASN23, ALA93, ILE118, THR120, ARG121, PRO122, ILE123 and 13 more
  • 5WI5 · 2.0 ångström resolution crystal structure of udp-N-acetylglucosamine… · EPU A503 · binds LYS23, ASN24, LEU27, ALA97, ARG125, PRO126, ILE127, ASP128 and 12 more
  • 6CN1 · 2.75 ångström resolution crystal structure of udp-N-acetylglucosamine… · EPU A501 · binds LYS22, ASN23, ALA94, ILE119, SER121, ARG122, PRO123, VAL124 and 13 more
  • 6Q11 · Crystal structure of mura from clostridium difficile, mutation C116S, in the presence of… · EPU A501 · binds LYS22, ASN23, ALA93, ILE118, THR120, ARG121, PRO122, ILE123 and 13 more

Residues it binds most

VAL 14, THR 14, ARG 14, ASP 14, LEU 14, SER 14, ILE 14, PHE 14, ALA 14, ASN 14 (residue and the binding sites it lines).

Found with

  • 0V5 · (2R)-2-(phosphonooxy)propanoic acid
  • MG · Magnesium ion
  • NA · Sodium ion
  • EDO · 1,2-ethanediol
  • CL · Chloride ion

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