MolNFT v1 · #138272 · protein
Choanoflagellate salpingoeca rosetta RAS with gmp-pnp
5WDR: “Choanoflagellate salpingoeca rosetta RAS with gmp-pnp”. X-ray diffraction, 3 ligands (GNP, MG, NA). MolNFT v1 #138272 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WDR
- Type
- protein
- Length
- 334 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F2UBE5
- Ligands
- GNP, MG, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 167 | — | F2UBE5 |
Ligands and binding sites
- GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WDR · Choanoflagellate Salpingoeca rosetta Ras with GMP-PNP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2UBE5
- Elsewhere: RCSB PDB 5WDR · PDBe 5WDR · UniProt F2UBE5
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