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MolNFT v1 · #138261 · protein

Acetolactate synthase from klebsiella pneumoniae in complex with a reaction intermediate

5WDG: “Acetolactate synthase from klebsiella pneumoniae in complex with a reaction intermediate”. X-ray diffraction, 4 ligands (A4Y, PYR, MG). MolNFT v1 #138261 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5WDG
Type
protein
Length
1,092 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P27696
Ligands
A4Y, PYR, MG, PO4

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein538—P27696
B—protein554—P27696

Ligands and binding sites

  • A4Y · (2S,3S)-2,3-dihydroxy-3-[(7s,8r,9as)-8-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2,7-dimethyl-5,7,8,10-tetrahydro-9AH-pyrimido[4,5-D][1, 3]thiazolo[3,2-a]pyrimidin-9A-yl]-2-methylbutanoic acid · ligand · 2 copies · chains A, B
  • PYR · Pyruvic acid · ligand · 2 copies · chains A, B
  • MG · Magnesium ion · metal · 6 copies · chains A, B
  • PO4 · Phosphate ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5WDG · Acetolactate Synthase from Klebsiella pneumoniae in Complex with a Reaction Intermediate · the same entry in another collection · chain A against A, TM-score 1.00
  • P27696 · AlphaFold monomer V2.0 prediction for acetolactate synthase, catabolic (P27696) · a predicted model of the same protein · chain A against A, TM-score 0.96

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