MolNFT v1 · #138261 · protein
Acetolactate synthase from klebsiella pneumoniae in complex with a reaction intermediate
5WDG: “Acetolactate synthase from klebsiella pneumoniae in complex with a reaction intermediate”. X-ray diffraction, 4 ligands (A4Y, PYR, MG). MolNFT v1 #138261 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5WDG
- Type
- protein
- Length
- 1,092 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P27696
- Ligands
- A4Y, PYR, MG, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 538 | — | P27696 |
| B | — | protein | 554 | — | P27696 |
Ligands and binding sites
- A4Y · (2S,3S)-2,3-dihydroxy-3-[(7s,8r,9as)-8-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2,7-dimethyl-5,7,8,10-tetrahydro-9AH-pyrimido[4,5-D][1, 3]thiazolo[3,2-a]pyrimidin-9A-yl]-2-methylbutanoic acid · ligand · 2 copies · chains A, B
- PYR · Pyruvic acid · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 6 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5WDG · Acetolactate Synthase from Klebsiella pneumoniae in Complex with a Reaction Intermediate · the same entry in another collection · chain A against A, TM-score 1.00
- P27696 · AlphaFold monomer V2.0 prediction for acetolactate synthase, catabolic (P27696) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27696
- Elsewhere: RCSB PDB 5WDG · PDBe 5WDG · UniProt P27696
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