MolNFT v1 · #138246 · protein
Crystal structure of the influenza virus pa endonuclease in complex with inhibitor 6C (sri-29775)
5WCT · Polymerase acidic protein: “Crystal structure of the influenza virus pa endonuclease in complex with inhibitor 6C (sri-29775)”. X-ray diffraction, 2 ligands (GY4, MN), 1 pocket (best druggability 0.65). MolNFT v1 #138246 on…
- PDB
- 5WCT
- Type
- protein
- Length
- 177 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polymerase acidic protein
- UniProt
- C3W5S0
- Ligands
- GY4, MN
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polymerase acidic protein | protein | 177 | 51% helix, 13% strand | C3W5S0 |
Ligands and binding sites
- GY4 · 2-{(2S)-1-[(4-chlorophenyl)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxylic acid · ligand · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 504 | 0.65 | 0.77 | 43 | MN, GY4 |
Compared structures
- 5WCT · Crystal structure of the influenza virus PA endonuclease in complex with inhibitor 6c… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3W5S0
- Elsewhere: RCSB PDB 5WCT · PDBe 5WCT · UniProt C3W5S0
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