MolNFT v1 · #137933 · protein

Antibody C706 in complex wth beta-amyloid peptide 1-16

5W3P: “Antibody C706 in complex wth beta-amyloid peptide 1-16”. X-ray diffraction, 3 ligands (ACE, SO4, NH2). MolNFT v1 #137933 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5W3P
Type: protein
Length: 442 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P05067
Ligands: ACE, SO4, NH2

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	—	protein	211	—	—
H	—	protein	215	—	—
P	—	protein	16	—	P05067

Ligands and binding sites

ACE · Acetyl group · ligand · chains L, P
SO4 · Sulfate ion · ion · 4 copies · chains L, P, H
NH2 · Amino group · ion · chains P
GOL · Glycerol · additive · 3 copies · chains L, P, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5W3P · Antibody C706 in complex wth beta-amyloid peptide 1-16 · the same entry in another collection · chain L against L, TM-score 1.00
P05067 · AlphaFold monomer V2.0 prediction for amyloid-beta precursor protein (P05067) · a predicted model of the same protein · chain P against A, TM-score 0.26

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05067
Elsewhere: RCSB PDB 5W3P · PDBe 5W3P · UniProt P05067

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