MolNFT v1 · #137756 · protein
Structure of the carbohydrate recognition domain of dectin-2 complexed with a mammalian-type high mannose MAN9GLCNAC2 oligosaccharide
5VYB · C-type lectin domain family 6 member a: “Structure of the carbohydrate recognition domain of dectin-2 complexed with a mammalian-type high mannose…”. X-ray diffraction, 4 ligands (MAN, BMA, CA). MolNFT v1 #137756 on GenesisL1: 3D…
- PDB
- 5VYB
- Type
- protein
- Length
- 143 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- C-type lectin domain family 6 member a
- UniProt
- Q6EIG7
- Ligands
- MAN, BMA, CA, NA
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | C-type lectin domain family 6 member a | protein | 143 | 13% helix, 41% strand | Q6EIG7 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- CA · Calcium ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5VYB · Structure of the carbohydrate recognition domain of Dectin-2 complexed with a… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6EIG7 · AlphaFold monomer V2.0 prediction for C-type lectin domain family 6 member a (Q6EIG7) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6EIG7
- Elsewhere: RCSB PDB 5VYB · PDBe 5VYB · UniProt Q6EIG7
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