MolNFT v1 · #137681 · protein
NADP+ soak of Y316S mutant of corn root FERREDOXIN:NADP+ reductase
5VW3 · Ferredoxin--NADP reductase: “NADP+ soak of Y316S mutant of corn root FERREDOXIN:NADP+ reductase”. X-ray diffraction, 3 ligands (FAD, NAP, MG), 1 pocket (best druggability 0.62). MolNFT v1 #137681 on GenesisL1: 3D structure, binding…
- PDB
- 5VW3
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin--NADP reductase
- EC
- 1.18.1.2
- UniProt
- Q41736
- Ligands
- FAD, NAP, MG
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferredoxin--NADP reductase (EC 1.18.1.2) | protein | 309 | 28% helix, 30% strand | Q41736 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 366 | 0.62 | 0.78 | 42 | FAD, NAP |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5VW3 · NADP+ soak of Y316S mutant of corn root ferredoxin:NADP+ reductase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q41736
- Elsewhere: RCSB PDB 5VW3 · PDBe 5VW3 · UniProt Q41736
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