MolNFT v1 · #137679 · protein + RNA
Crystal structure of SPYCAS9-sgrna-ACRIIA4 ternary complex
5VW1: “Crystal structure of SPYCAS9-sgrna-ACRIIA4 ternary complex”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #137679 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VW1
- Type
- protein + RNA
- Length
- 1,521 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q99ZW2, A0A0E0UT28
- Ligands
- MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1362 | — | Q99ZW2 |
| C | — | rna | 73 | — | — |
| B | — | protein | 86 | — | A0A0E0UT28 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains C
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, C
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A, C
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VW1 · Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q99ZW2 · AlphaFold monomer V2.0 prediction for CRISPR-associated endonuclease CAS9/CSN1 (Q99ZW2) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99ZW2
- Every structure of UniProt A0A0E0UT28
- Elsewhere: RCSB PDB 5VW1 · PDBe 5VW1 · UniProt Q99ZW2 · UniProt A0A0E0UT28
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