MolNFT v1 · #137552 · protein + DNA
Human DNA polymerase beta 8-OXOG:DA extension with dttp after 90 S
5VS3: “Human DNA polymerase beta 8-OXOG:DA extension with dttp after 90 S”. X-ray diffraction, 3 ligands (PPV, MG, NA). MolNFT v1 #137552 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VS3
- Type
- protein + DNA
- Length
- 359 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- PPV, MG, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 16 | — | — |
| P | — | dna | 12 | — | — |
| D | — | dna | 5 | — | — |
| A | — | protein | 326 | — | P06746 |
Ligands and binding sites
- PPV · Pyrophosphate · ligand · chains P, A
- MG · Magnesium ion · metal · 6 copies · chains T, P, A, D
- NA · Sodium ion · metal · chains A
- ACT · Acetate ion · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 5VS3 · PDBe 5VS3 · UniProt P06746
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