MolNFT v1 · #137486 · protein
Nitrogenase CP1 at pH 6.5
5VQ3: “Nitrogenase CP1 at pH 6.5”. X-ray diffraction, 4 ligands (HCA, ICS, CLF). MolNFT v1 #137486 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VQ3
- Type
- protein
- Length
- 1,950 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00467, P11347
- Ligands
- HCA, ICS, CLF, FE2
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 517 | — | P00467 |
| B, D | — | protein | 458 | — | P11347 |
Ligands and binding sites
- HCA · 3-hydroxy-3-carboxy-adipic acid · ligand · 2 copies · chains A, C
- ICS · iron-sulfur-molybdenum cluster with interstitial carbon · ligand · 2 copies · chains A, C
- CLF · FE(8)-S(7) cluster · ligand · 2 copies · chains A, B, C, D
- FE2 · Fe (II) ion · metal · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VQ3 · Nitrogenase Cp1 at pH 6.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P11347 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein beta chain… · a predicted model of the same protein · chain B against A, TM-score 1.00
- P00467 · AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00467
- Every structure of UniProt P11347
- Elsewhere: RCSB PDB 5VQ3 · PDBe 5VQ3 · UniProt P00467 · UniProt P11347
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