MolNFT v1 · #264975 · protein
AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain (P00467)
P00467: “AlphaFold monomer V2.0 prediction for nitrogenase molybdenum-iron protein alpha chain (P00467)”. 6 pockets (best druggability 0.72). MolNFT v1 #264975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P00467
- Type
- protein
- Length
- 534 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7f2D6eD43Ec0f1b2F403c9c6AA34D467bD650c11
- Molecule
- Nitrogenase molybdenum-iron protein alpha chain
- UniProt
- P00467
- Pockets
- 6 · best druggability 0.72
Structure
1 distinct chain · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrogenase molybdenum-iron protein alpha chain | protein | 534 | 48% helix, 13% strand | P00467 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.72 | 0.83 | 49 | empty |
| 2 | 329 | 0.61 | 0.78 | 35 | empty |
| 3 | 136 | 0.50 | 0.80 | 23 | empty |
| 4 | 69 | 0.38 | 0.79 | 19 | empty |
| 5 | 52 | 0.32 | 0.77 | 13 | empty |
Compared structures
- 1MIO · X-ray crystal structure of the nitrogenase molybdenum-iron protein from clostridium… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1MIO · X-ray crystal structure of the nitrogenase molybdenum-iron protein from clostridium… · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4WES · Nitrogenase molybdenum-iron protein from clostridium pasteurianum at 1.08 a resolution · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4WES · Nitrogenase molybdenum-iron protein from Clostridium pasteurianum at 1.08 A resolution · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4WN9 · Structure of the Nitrogenase MoFe Protein from Clostridium pasteurianum Pressurized with… · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 5VQ3 · Nitrogenase Cp1 at pH 6.5 · an experimental structure of the same protein · chain A against C, TM-score 0.96
- 4WN9 · Structure of the nitrogenase mofe protein from clostridium pasteurianum pressurized with… · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 5VQ3 · Nitrogenase CP1 at pH 6.5 · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00467
- Elsewhere: UniProt P00467 · AlphaFold DB P00467
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