MolNFT v1 · #137341 · protein
Short PCSK9 delta-P' complex with shrunken peptide bearing homo- arginine
5VLK: “Short PCSK9 delta-P' complex with shrunken peptide bearing homo- arginine”. X-ray diffraction, 3 ligands (ACE, CA, NH2). MolNFT v1 #137341 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VLK
- Type
- protein
- Length
- 377 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8NBP7
- Ligands
- ACE, CA, NH2
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 355 | — | Q8NBP7 |
| Y | — | protein | 13 | — | — |
| Z | — | protein | 9 | — | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 2 copies · chains Y, Z
- CA · Calcium ion · metal · chains A
- NH2 · Amino group · ion · chains Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VLK · Short PCSK9 delta-P' complex with shrunken peptide bearing homo-Arginine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NBP7
- Elsewhere: RCSB PDB 5VLK · PDBe 5VLK · UniProt Q8NBP7
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