MolNFT v1 · #137314 · protein
Horse liver alcohol dehydrogenase complexed with adenosine-5- diphosphoribose
5VKR · Alcohol dehydrogenase E chain: “Horse liver alcohol dehydrogenase complexed with adenosine-5- diphosphoribose”. X-ray diffraction, 2 ligands (APR, ZN), 1 pocket (best druggability 0.73). MolNFT v1 #137314 on GenesisL1: 3D structure…
- PDB
- 5VKR
- Type
- protein
- Length
- 374 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol dehydrogenase E chain
- EC
- 1.1.1.1
- UniProt
- P00327
- Ligands
- APR, ZN
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alcohol dehydrogenase E chain (EC 1.1.1.1) | protein | 374 | 31% helix, 25% strand | P00327 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 581 | 0.73 | 0.80 | 52 | APR |
Compared structures
- 5VKR · Horse liver alcohol dehydrogenase complexed with adenosine-5-diphosphoribose · the same entry in another collection · chain A against A, TM-score 1.00
- P00327 · AlphaFold monomer V2.0 prediction for alcohol dehydrogenase E chain (P00327) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00327
- Elsewhere: RCSB PDB 5VKR · PDBe 5VKR · UniProt P00327
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