MolNFT v1 · #137203 · protein
DHX36 with an N-terminal truncation bound to ADP-BEF3
5VHC: “DHX36 with an N-terminal truncation bound to ADP-BEF3”. X-ray diffraction, 3 ligands (BEF, ADP, MG). MolNFT v1 #137203 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VHC
- Type
- protein
- Length
- 799 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q05B79
- Ligands
- BEF, ADP, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 799 | — | Q05B79 |
Ligands and binding sites
- BEF · Beryllium trifluoride ion · ligand · chains D
- ADP · Adenosine-5'-diphosphate · ligand · chains D
- MG · Magnesium ion · metal · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VHC · DHX36 with an N-terminal truncation bound to ADP-BeF3 · the same entry in another collection · chain D against D, TM-score 1.00
- Q05B79 · AlphaFold monomer V2.0 prediction for ATP-dependent DNA/RNA helicase DHX36 (Q05B79) · a predicted model of the same protein · chain D against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05B79
- Elsewhere: RCSB PDB 5VHC · PDBe 5VHC · UniProt Q05B79
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