MolNFT v1 · #137063 · protein
The crystal structure of der P 1 allergen complexed with Fab fragment of mab 5H8
5VCN: “The crystal structure of der P 1 allergen complexed with Fab fragment of mab 5H8”. X-ray diffraction, 3 ligands (NAG, CA, PO4). MolNFT v1 #137063 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5VCN
- Type
- protein
- Length
- 1,291 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q3HWZ5
- Ligands
- NAG, CA, PO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 222 | — | Q3HWZ5 |
| C, E | — | protein | 210 | — | — |
| D | — | protein | 213 | — | — |
| F | — | protein | 214 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VCN · The crystal structure of der P 1 allergen complexed with Fab fragment of mab 5H8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3HWZ5
- Elsewhere: RCSB PDB 5VCN · PDBe 5VCN · UniProt Q3HWZ5
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