MolNFT v1 · #137041 · protein

Crystal structure of L-selectin LECTIN/EGF domains

5VC1: “Crystal structure of L-selectin LECTIN/EGF domains”. X-ray diffraction, 4 ligands (NAG, BMA, MAN). MolNFT v1 #137041 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5VC1
Type: protein
Length: 153 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P14151
Ligands: NAG, BMA, MAN, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	153	—	P14151

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
BMA · beta-D-mannopyranose · sugar · 2 copies
MAN · alpha-D-mannopyranose · sugar
CA · Calcium ion · metal · chains A
PG4 · Tetraethylene glycol · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VC1 · Crystal structure of L-selectin lectin/EGF domains · the same entry in another collection · chain A against A, TM-score 1.00
P14151 · AlphaFold monomer V2.0 prediction for L-selectin (P14151) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P14151
Elsewhere: RCSB PDB 5VC1 · PDBe 5VC1 · UniProt P14151

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