MolNFT v1 · #137001 · protein
Crystal structure of KDM4A tandem tudor domain in complex with a tri- methyl lysine competitive inhibitor
5VAR · Lysine-specific demethylase 4A: “Crystal structure of KDM4A tandem tudor domain in complex with a tri- methyl lysine competitive inhibitor”. X-ray diffraction, 1 ligand (92Y). MolNFT v1 #137001 on GenesisL1: 3D structure, binding…
- PDB
- 5VAR
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysine-specific demethylase 4A
- EC
- 1.14.11.-
- UniProt
- O75164
- Ligands
- 92Y
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine-specific demethylase 4A (EC 1.14.11.-) | protein | 108 | 9% helix, 54% strand | O75164 |
Ligands and binding sites
- 92Y · (1R,2S,3R,4S)-3-[(dimethylamino)methyl]-1-phenylbicyclo[2.2.1]heptan-2-ol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5VAR · Crystal structure of KDM4A tandem TUDOR domain in complex with a tri-methyl lysine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75164
- Elsewhere: RCSB PDB 5VAR · PDBe 5VAR · UniProt O75164
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