MolNFT v1 · #136965 · protein
Structure of the H477R variant of rat cytosolic pepck in complex with phosphoglycolate and GDP.
5V9H: “Structure of the H477R variant of rat cytosolic pepck in complex with phosphoglycolate and GDP.”. X-ray diffraction, 4 ligands (GDP, PGA, MN). MolNFT v1 #136965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5V9H
- Type
- protein
- Length
- 1,220 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07379
- Ligands
- GDP, PGA, MN, NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 611 | — | P07379 |
| B | — | protein | 609 | — | P07379 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B
- PGA · 2-phosphoglycolic acid · ligand · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 6 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5V9H · Structure of the H477R variant of rat cytosolic PEPCK in complex with phosphoglycolate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07379
- Elsewhere: RCSB PDB 5V9H · PDBe 5V9H · UniProt P07379
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